Index _ | A | C | D | E | F | G | I | L | M | N | P | R | S | T _ __init__() (gatac.tl.DNAMotif method) (gatac.tl.MiniBatchLDA method) A alpha (gatac.tl.MiniBatchLDA property) C call_peaks() (in module gatac.tl) chromvar() (in module gatac.tl) combine() (in module gatac.pp) compute_deviations() (in module gatac.tl) compute_metrics() (in module gatac.pp) compute_peak_bias() (in module gatac.tl) D detect_doublets() (in module gatac.pp) DNAMotif (class in gatac.tl) E eta (gatac.tl.MiniBatchLDA property) F family (gatac.tl.DNAMotif attribute) filter_fragments() (in module gatac.pp) fit() (gatac.tl.MiniBatchLDA method) fit_transform() (gatac.tl.MiniBatchLDA method) G get_marker_peaks() (in module gatac.tl) gsea_motif_enrichment() (in module gatac.tl) I id (gatac.tl.DNAMotif attribute) info_content() (gatac.tl.DNAMotif method) L lda() (in module gatac.tl) M make_gene_matrix() (in module gatac.pp) make_gene_score_matrix() (in module gatac.pp) make_parquet() (in module gatac.pp) make_parquet_batch() (in module gatac.pp) make_peak_matrix() (in module gatac.tl) make_tile_matrix() (in module gatac.pp) marker_peaks() (in module gatac.tl) merge_peaks() (in module gatac.tl) MiniBatchLDA (class in gatac.tl) motif_enrichment() (in module gatac.tl) N name (gatac.tl.DNAMotif attribute) P parse_meme() (in module gatac.tl) pwm (gatac.tl.DNAMotif attribute) R read_fragments_parquet() (in module gatac.pp) read_motifs() (in module gatac.tl) reverse_complement() (gatac.tl.DNAMotif method) S sample_bg_peaks() (in module gatac.tl) sample_gc_matched_background() (in module gatac.tl) scan_motifs() (in module gatac.tl) select_features() (in module gatac.pp) select_features_multi() (in module gatac.pp) spectral() (in module gatac.tl) T to_log_odds() (gatac.tl.DNAMotif method) top_peaks() (gatac.tl.MiniBatchLDA method) transform() (gatac.tl.MiniBatchLDA method)
